{"id":164,"date":"2025-01-17T10:01:18","date_gmt":"2025-01-17T09:01:18","guid":{"rendered":"https:\/\/nutrineuro-prod.onlinecreation.pro\/?page_id=164"},"modified":"2025-01-17T10:01:38","modified_gmt":"2025-01-17T09:01:38","slug":"microscopy-image-analysis","status":"publish","type":"page","link":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/resources-and-competences\/microscopy-image-analysis\/","title":{"rendered":"Microscopy &#8211; Image analysis"},"content":{"rendered":"\n<p>Managers: Jean-Christophe Delpech and Alexandra Sere<\/p>\n\n\n\n<h3 class=\"wp-block-heading\">Applications<\/h3>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Immunohistochemistry<\/li>\n\n\n\n<li>In situ hybridization<\/li>\n\n\n\n<li>Epifluorescence imaging<\/li>\n\n\n\n<li>Transmitted light imaging<\/li>\n\n\n\n<li>Automated wide-field acquisition<\/li>\n\n\n\n<li>Phagocytic activity study<\/li>\n\n\n\n<li>Dendritic spine counting<\/li>\n<\/ul>\n\n\n\n<h3 class=\"wp-block-heading\">Equipment<\/h3>\n\n\n\n<h4 class=\"wp-block-heading\">Microscopes<\/h4>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Zeiss Axio Observer7 with apotome3, colibri 7 LED system, AI sample finder, equipped with an Axiocam 305 color camera and an Axiocam 712 mono fluorescent camera (Zen software with Intellesis+ImAnalysis modules)<\/li>\n\n\n\n<li>Leica Med IHC-MICR-0,5 equipped with a Nikon DXM1200 digital camera (Nikon ACT-X software) and an Olympus BX51TF-5<\/li>\n\n\n\n<li>Nikon Eclipse E400, equipped with Hamamatsu orca-R\u00b2 camera and piezzo (Nikon NIS Element AR software)<\/li>\n\n\n\n<li>Olympus BX51TF microscope, equipped for Lucia with a Nikon<\/li>\n\n\n\n<li>DXM 1200 digital camera for Lucia and PixelLink digital camera and X,Y position sensors for Mercator<\/li>\n\n\n\n<li>BIC platform: macroscope, confocal, multiphoton, FRET, FRAP, STED, PALM, metamorph software, etc.<\/li>\n<\/ul>\n\n\n\n<h4 class=\"wp-block-heading\">Image analysis software<\/h4>\n\n\n\n<p>Zen with Intellesis analysis module (analysis approach with machine learning)<br>Image J\/Fiji (free image analysis software)<br>Imaris (3D image analysis &#8211; images acquired in fluorescence), Lucia (morphology, grayscale),<br>Mercator (cartography, stereology)<br>Metamorph<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Managers: Jean-Christophe Delpech and Alexandra Sere Applications Equipment Microscopes Image analysis software Zen with Intellesis analysis module (analysis approach with [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":18,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-164","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/pages\/164","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/comments?post=164"}],"version-history":[{"count":1,"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/pages\/164\/revisions"}],"predecessor-version":[{"id":165,"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/pages\/164\/revisions\/165"}],"up":[{"embeddable":true,"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/pages\/18"}],"wp:attachment":[{"href":"https:\/\/nutrineuro.bordeaux.inrae.fr\/en\/wp-json\/wp\/v2\/media?parent=164"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}